Protein Info for Dshi_2678 in Dinoroseobacter shibae DFL-12

Annotation: ABC transporter related (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF00005: ABC_tran" amino acids 25 to 171 (147 residues), 120 bits, see alignment E=1.2e-38

Best Hits

Swiss-Prot: 53% identical to YBBA_SHIFL: Uncharacterized ABC transporter ATP-binding protein YbbA (ybbA) from Shigella flexneri

KEGG orthology group: K02003, (no description) (inferred from 100% identity to dsh:Dshi_2678)

MetaCyc: 46% identical to lipoprotein release complex - ATP binding subunit (Escherichia coli K-12 substr. MG1655)
RXN-22427

Predicted SEED Role

"ABC transporter ATP-binding protein YvcR"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LIH0 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Dshi_2678 ABC transporter related (RefSeq) (Dinoroseobacter shibae DFL-12)
MTDPVLSLTDVSLRLDGNAGPVDILHDISLKVETGETVGLIGPSGSGKSSLLMVLGGLER
ASSGQVLALGHDLTRLDEDALARFRRDHMGVVFQSFHLIPTMTALENVATPLELAGAADA
FERAEAELVAVGLADRVHHYPSQMSGGEQQRVALARAAAPRPALLLADEPTGNLDGSTGE
AIMDLLFGLRDRHGATLVLVTHSRELAARCDRVVRLRDGRIESDSATAPREAAE