Protein Info for Dshi_2459 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1286 PF04865: Baseplate_J" amino acids 926 to 1037 (112 residues), 30.9 bits, see alignment E=9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2459)

Predicted SEED Role

"FIG00910848: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LSA0 at UniProt or InterPro

Protein Sequence (1286 amino acids)

>Dshi_2459 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MTRPSPHTAHTGHLSRAARAPEALATDYFRLDERSRAQLVHTATGLARLLTYYDAQNRPH
GPRPEGQGAWEAFFRHDLTFLLAEIASVDAALEYRATMSDTAPQAMCRRVVMDTVRIWDW
RDRAREMAVFAAPDSLVADVAHTLSRPDQTELTSAPFTALRRALDPLEVEARAEAARRLG
PTEVFAAALPDPAALSRAVSAANRATAQVALAAETYLDRALAERRNHPGHLGLFLAFVDL
LQKAQADLNRMTDRHLEFYFRKVLRSAPQPARPDSTHVTFALAPGARALTLEAGTPLVAG
SGAGPEAAIFELDRAVEVTAARVAHIRAVAVQRNMALRDRGGAPFVEAVDVYPVANSEDG
RGAPLADPDLGWSPFGPGLDAPSHVGFALAAPILELAGGQRDITVTLACDPKGESTLARA
LAEYEAVLADRYQGAPEDTGSGKLPPDIFAKFLAEAVRVSITTATGWHPVSEVTLGADPD
DPDALRLRLSVPATAPPLASHPDTHPEPVLRVVLNPAARAFAYSPLHRLRVLGATLAVEV
TDLTTLKMETDIAPVAPGKPFAPFGPMPLPRARLTVAAPELARKQPSQLRLCFHWTGLPL
PPETFASHYAGYAPKLSETDFRASLARSDGVSWHPLPVQGPGVARPERDAPLFGIDAKGG
VATETAWHVPHLPRPEGRSDPAASAPLARPDTRPPGTLRVELTGPRFGFGQRLYPELLAA
AAMKPKPGALSKALKAVTPKALAKDTEAPPPRPPLLPMLTGVGLSYRAAVRCETLGEGDP
IAFYNLMVHGPMRPSGSRRLLRADLDVDGYLMIGLERTRLPETVSLFFDIRDSLAESWAP
GDPGPRPGVCWYYLGAGGWREVSAGALREDTTHGLTTRGVVEIALPQTAQETDQFSDAPL
VWLSVALRGNRRRFGRIVDITTHGVRATRRITAAPGVVTAQAGAAPHLPAGQITRFLAAR
PAIAKITQPVPSSGGRAPERDAAFRVRLSERLGHKMRAQRPMDYARMVLQEFDEIGDVRV
LPDGAGGVEVVVAPVRAPDRPTRFPRVPLHLRAEIAAWLAARSSLPVARIDVRNPSYETI
RVQAHLVPRPGSVALSVTDVTAHVAGLIAPWMQTRDAPMPIGQARLDVAMLLQHLRAMPG
LEEVLGFSVLHVFRTRRANGSALGPHGFKDSARLRDAPDGDRAAVLLGVTPSSVFVPARR
HLISILPPRTGIGDLEVGADFIAASPAKLASYSADPASLPLRPSPAGIGNLTIGEDLILT
RLEDTRPPAFAPDTRHHALDAVFLVK