Protein Info for Dshi_2456 in Dinoroseobacter shibae DFL-12
Annotation: hypothetical protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2456)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A8LS97 at UniProt or InterPro
Protein Sequence (1444 amino acids)
>Dshi_2456 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12) MAAAGSLARARMPRGPLQPARLRDLAHYLQHGTYPHWPGAAAPGLSGLLEPCLADHPDGL RALLASLADQPAVAQRLATHVPAPLRARLAALAPEAGLPGSDKPLSHASPAQPAVSAPPA AGPEAREDRAATSAVPGDPTAALDPSTRAAPSPPQRRAGSAADLPAENAVPPMPRAAPGH PVDPSEAAGSRGATPSDPAPAGPTAPQGPGAANERSLPAGGSGRPPSPGLPKAPSAAPSP PPAVDAPDARVPPGGDRVLPLSSADPASPTPAATGTGQFPAGLDTPTGPRSASPAARAPA GAQADPPGAARSGPSASPIRRVAPAQDVPRPGPSSVPGGSRAQNVFEGGATDTPPPASDP TGIGSSGSAGPVPRAPAAPPSHGPQDPSEPSHQPSGSEVDRGARAPDPTSRTNASPGSDP AEDTARAFPTAPSRQRGDPDTPDMLGQGAKVGPARPQAPETAPPVVPRAAPPNAPPALGA RRAPEATEAPGPVLADPLPARDGARSPVDTTARTPHDDPPRAQAPDAVPRVNDARAEVSE DTRAAPEDSLAAAASGERAPAASLPTAPGLTAPNPGAPARPSALRPPPQDPGAAPVLAVR AGAHPDGQDASQPRQPSHIRGDETPPAPPEIGMDWAGLLQTPTGRQALLSPLDWTRIEAA HLALLPTLGGFAVTILRAAAPDDTLGPHLAEASLTLLAGGGFEGDARRWLRAVLRAGSRG RTAETPGALAAQLSALASGRAAEPRFAPLIEMLRDLQAEESAPRDRVQDTDPPPATTRAQ GRSPAEEPPMRAEVVLPRPPAATETPSAAMDVATALVARYLRPDAARVTPSGPPPLAAAL AAALEQVSPAQRAATLSARLGQDQAQLARRAAAWLAAVANVPLSAADLTQATLRAWANGA ASGPDPSAPVPLESVLSALAEIASERAAQPLETVRARMARDLSEPPEGEAGQALSGLSAH ELASLRAALAEALDTSASAETHPNVTPLKSRDIAPIAGEVPPHGRMPETASDGHVDGNPI GRPQRPETAAPPTPDPTSPETVRTAAAPAPARGASPVPTSAPPDGVAAQDTAGVRSSERG RDQSASSPFDRSVTGGLAAETPEDGATPTDPADGNRTDARAPGPDAQVALQQVAQRLRQA GLGLDPQDLSRRLTAANAAAPIDAPDGPGAFHAALAAGLGTPLGSLMDHLSPMGLPTPPA RHVDALETVARALRRAGIGLDPRDLAARLAAAHAAAPIDAPEGPGAFHAALAAALDTSVE ILLAHLAPPPAPLAPAGEIHTGLAGLVLLHVHLATYLARSDCLDPSGGLRDDSRPRAVHL LALLASGRMDLPEHELALPKLLCGMPLATPLAPGGAATPEEAALAESLLGFTASQVAAFA NTDADALRETFVMRHGVIRRPGPDAALTLQVTKGPFDMLLGGIPWPWSVVALPWMPEALH VSWT