Protein Info for Dshi_2384 in Dinoroseobacter shibae DFL-12

Annotation: integral membrane protein-like protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details PF10003: DUF2244" amino acids 27 to 167 (141 residues), 137.5 bits, see alignment E=1.3e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2384)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LRT9 at UniProt or InterPro

Protein Sequence (173 amino acids)

>Dshi_2384 integral membrane protein-like protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MPLEWITTSQQAPEKSGACLTEQRLYLWPHKSLTAKGFVAFMTITALALSLPLVAVLGTG
VLWGLLPFMLLSLGGVWYGIRRNQRDMSLHEVLVLAEDRIALTRHNPHRAAQHWEANPYW
VELRLHPKEGPVENYITLRGSDREVELGAFLSPEERLDLHADLQDRLNRMRRP