Protein Info for Dshi_2210 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 PF12708: Pect-lyase_RHGA_epim" amino acids 188 to 248 (61 residues), 33.3 bits, see alignment 2.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2210)

Predicted SEED Role

"FIG01072642: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LR23 at UniProt or InterPro

Protein Sequence (763 amino acids)

>Dshi_2210 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MNKAITDGLDLMPPPFSAGLDVWSQGNGTPPTATWNGAPNAVLVPSDADFGSCLEIQKVN
NTTRIRYKGETPILPGCYLRITARVKVLSGALPDARIGAWAGAAGGASVGGIVEDGPLVS
IDSFGEVYEISAIVGSGSRGGVDMAWGTTPIYGHFGLDLSGPNGGLIRIDDIRIEDVTTV
YLRKMMDWVDVKDYGARGDGVTDDSAAFIAADAAANGRRVLVPEGLYFLAEHVTMTAETR
FEGTVTMPDNKRLSLTRNFNLNAYFDAFGDEVLAFKKAVQTYLNFSDHDVLDLSGRSISL
TEPIDIHAAVGNKDTSTIRRVIRNGQFNCAPSPAWDTVEASSAASYTVNTPFELFDVENI
AQIQPGSLVEGEGVGREVYVRDVNVGARRLTLSQPLYDAEGTQTYTFRKFQYALDFSGFS
RLAKFTLQNIDLRLNENASGILLAPDGDVFAVEECDFTKPKDRAITSHGVGCQNLHVDRC
QFLSPEIDEDVIDRTSIGININANDAKIRDNRAVRFKHFMVVHGAGHIFTGNHWFQGDGT
LGGPRTAGIVLTNLNVKTTFTGNYLDNSTLEWTNEHDATPDFGVELSFGGLTITGNIFTV
NGAGPWFRFIQIKPYGAGHFIQGLSVSDNVFKSINGEIDRVEGVDASIAPLDVGRTRNVT
FDANAYNAITRITVNPVTLPLEQNTEAQQWVLDTDGYLPFEGRARFVTGVIAEGNITDDT
GRLVYAMPTMNFNHGPERDQVRLNWPEPCKGTVHVTVRADRPV