Protein Info for Dshi_2002 in Dinoroseobacter shibae DFL-12

Annotation: FG-GAP repeat domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF13517: FG-GAP_3" amino acids 48 to 106 (59 residues), 36 bits, see alignment 1.3e-12 amino acids 259 to 329 (71 residues), 29.1 bits, see alignment E=1.8e-10 amino acids 345 to 391 (47 residues), 32.2 bits, see alignment 2e-11 PF07593: UnbV_ASPIC" amino acids 424 to 466 (43 residues), 35.2 bits, see alignment 1.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2002)

Predicted SEED Role

"FG-GAP repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LP59 at UniProt or InterPro

Protein Sequence (492 amino acids)

>Dshi_2002 FG-GAP repeat domain protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MRAIALLACLAGPAQSEIRFEDLSGTLPPHVYSGGWEHFVGGGLAVLDCDGDGLPELFAA
GGEAPAILLRNRGGMRFAPGLLPKIIGVTGAYPLDIDGDGWRDLFVLRVGPNLVLRGGPD
CAFTEATAELGIDPGDAWSTAFTAWVAPGDERPTLFVANYVDRDDPDGPFEACDDHQVLR
PGQAGGFRSDSFGPGFCTLSALAARDARGRMTLRLSNDRHYYVRGGYEQMFDLAERRFLG
PEDGWPQVALWGMGIASRDLTGDGRDEVMLTSMGDQLMQIAQADGTYAAAPFAIGTYAQR
PHTGEDGRPSTGWHAEFGDVDNDGRADLFLAKGNVDQMPGLAMQDPNNLLHQRADGRFEE
VSVAAGVATTARSRGAALADLDGDGRLDLVVVNRRAPMELYRNVSQQTGRWLAVDLSALG
LAEIGAQVTVITNAGAQVQQRLIGGGHAGGSAAPLHFGLGEATQAQVELRDAADRVIWQG
ESAADRVLRVEP