Protein Info for Dshi_1998 in Dinoroseobacter shibae DFL-12
Annotation: ABC transporter related (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K10545, D-xylose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 100% identity to dsh:Dshi_1998)Predicted SEED Role
"D-xylose transport ATP-binding protein XylG" in subsystem Xylose utilization
Isozymes
Compare fitness of predicted isozymes for: 3.6.3.17
Use Curated BLAST to search for 3.6.3.17
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A8LP55 at UniProt or InterPro
Protein Sequence (248 amino acids)
>Dshi_1998 ABC transporter related (RefSeq) (Dinoroseobacter shibae DFL-12) MTPLVELDDISISFGGIRAVDGVSLDLYPGEVVGLLGHNGAGKSTLIKILAGAYRKDSGE IRINGKKAEINSPRDARRYNIETIYQTLALADNLDASSNLFLGRELTTRLGFVDDTRMEA ETRRIMARLNPNFQKLSEPVSALSGGQRQSVAIARAVYFNAQILIMDEPTAALGVHETQM VADLIKELKAQGLGIFLISHDTREMLELCDRVSVMKNGKLVGTERVEDVTEDDILSMIIL GKNPKAVA