Protein Info for Dshi_1951 in Dinoroseobacter shibae DFL-12

Annotation: secretion protein HlyD family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1097 transmembrane" amino acids 350 to 370 (21 residues), see Phobius details amino acids 375 to 393 (19 residues), see Phobius details amino acids 408 to 431 (24 residues), see Phobius details amino acids 438 to 455 (18 residues), see Phobius details amino acids 476 to 493 (18 residues), see Phobius details amino acids 504 to 523 (20 residues), see Phobius details amino acids 571 to 594 (24 residues), see Phobius details amino acids 601 to 621 (21 residues), see Phobius details amino acids 763 to 781 (19 residues), see Phobius details PF13533: Biotin_lipoyl_2" amino acids 797 to 837 (41 residues), 27.8 bits, see alignment (E = 2.5e-10) PF16576: HlyD_D23" amino acids 950 to 1064 (115 residues), 45.8 bits, see alignment E=7e-16 PF13437: HlyD_3" amino acids 958 to 1055 (98 residues), 36.8 bits, see alignment E=8.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1951)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LP10 at UniProt or InterPro

Protein Sequence (1097 amino acids)

>Dshi_1951 secretion protein HlyD family protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MPPSHAALVPDGTPRKRYRLSPDAKLTRAPVEEGKPRHGFYKDAKSGRLFRLGAEEFFLL
TQLERGEDFTAAGKAFRARFGTGVREATIAGFAAQMVAAGVLVEATGTDPRAEAPSPRPD
RAAPLRPPIDQSRAHNADRDEFDAFEDLLPEAGSAFDGPPEDDIDGLEELIFSDAPDDRA
DPPKPAPEPASGETPAAPSFRAAAAAARVAKGAAGTARPDPDQPAESPPKDSQAPSTDKA
ASPADTPAPDGKADTSATPAPGPGPQPRRKQTFFRKTGLHDGVARKPAKKDDTRDAADTA
PQDPPDAPADRAAPTAPGPEPARARAEATAPRAAFGTGPDPKDKAPGTGIIKLFAPNGLF
AVLNALFGWMAWFKWLLWPLTLFAFMAVFTRLSEYGTSISNARGAIDLVWRLVISTLTVN
FCAAFFTGWAIHRQGAKVPAFGIRMILYVIPRFAVDEQAVYKLPREAKLAVYSTTMRARL
FLFAAGTTLWAFTRHSQTVIPDMTLLVSQIALLTLVFTAFPLMSGDGYKWLTTFFGQEML
KQRAHAWLFRNNQSKMGFTYPEPSAGEKRAFIFYTVGSLLFMGLVLSFLFVWVSGALVGR
YGGSGAALFFFLLVAIGFWVMSMKSKQHKAMEHGVKTMMAEKQAARAAQGGAGGFGGAEG
FAAQGAGGGFTRGAGAGGGFGGGPGGFAAGGAGGFAAPAGSRAGAGVAAAPGQSRAMVPV
PQTGRALALGQSRDLTRLGSRPLPGVLAEPAPKSRRWAWIRRLTLLAAAGALIYAAFQPY
AFEVGGDFTILPDTRIEVGARVAGELVEIHIDEGDVVSEGDLLARMSDWEPRLEVDVRVA
KLAQAEARLQDLLDGATAEEIAIAEENVARAEAELPFLRSQAERADELFARNAISQVEYE
RLRLEYQTGQIDLRSAQAVLADVTAPPSAPDVAVAEAEIERLNAELAFYRDQLDKVELRA
TADGRIVTENVQLLRGKYLQVGELFVEIEDHEIARAEVLVSETDIGLVEVNDRVRLKAWA
IPDEERIGTVVSIAPSAEAEEFGRVVRVKTQFPNEEGFFRPEMTGFAKIEGAEMKTWEAF
SRLIVRFFQIEVWGWIP