Protein Info for Dshi_1946 in Dinoroseobacter shibae DFL-12

Annotation: inner-membrane translocator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 41 to 58 (18 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details amino acids 235 to 259 (25 residues), see Phobius details amino acids 280 to 310 (31 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 58 to 333 (276 residues), 135.8 bits, see alignment E=8e-44

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to dsh:Dshi_1946)

Predicted SEED Role

"Nucleoside ABC transporter, permease protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LP05 at UniProt or InterPro

Protein Sequence (349 amino acids)

>Dshi_1946 inner-membrane translocator (RefSeq) (Dinoroseobacter shibae DFL-12)
MRLEAIPAPTLTRTLGLPAVALTLTVIAASGLALVAGGDPFAVLGLIVQGAVGSKFALLE
TLNRATPLIFTGLAVAVAFRAKLWNIGAEAQLYGGAVITVVLGTGFLPWPAGVLLPVLVI
ASMLTGALLLLGPAYLKTRLGVDEVVTTLLLNFIALLFVSMLLEGPLKDPMGMGWPKSER
LIPEARLPRLVDGLRLHWGFALALIAAAAVWVIQTRTTLGYEMRAVGQNPDAARFAGIPV
GAVILKTAFLSGGLAALAGFSEVAGLKGSLTLDLSPGFGYTGIIVAMLALLNPLGVVVSA
LFVAGVFVGADSMSRAADVPTYIADILLALALLSMVLAILLTRFRVVRD