Protein Info for Dshi_1877 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details PF10011: DUF2254" amino acids 19 to 371 (353 residues), 270.9 bits, see alignment E=7.7e-85

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1877)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNA6 at UniProt or InterPro

Protein Sequence (424 amino acids)

>Dshi_1877 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MTRLTWLKLVLLRYYRNMGLRVLLYALLSLVATLISPLVSPLLNGRVNMQIDFASVTPVL
TILASSMLAVSTFSLNIMVSAHRGAADVATPRMHRILLEDTTTQSVLAAFIGAFVYSLGS
IVLYRLGFYPEDAALVVMAITTVVVILVVISLLRWIEHLTTMGSLRDSLASAETRAREAL
KAQAENPRFGASPLSPDTVLPLSTTPLRAPVSGYLQLIDMAAIEDCLPDQAVLYLDVAPG
AHLLEGEVIGQVSGQVDDDTLSGLGRALTFGDCRTHEQDAAFGLTVLSEIAEKALSPGIN
DGGTATEALLILKALLWEFGRTDPDPDAPKAPRVFAAFPGPARFIEAAFAPTARDGAGSI
ETALTLRQCLASLSRSDITEMSAAAQALAANALCYAEEAGMPPRDLDRLRAIAVGAPSAQ
AAAV