Protein Info for Dshi_1762 in Dinoroseobacter shibae DFL-12

Annotation: pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1135 transmembrane" amino acids 712 to 735 (24 residues), see Phobius details PF02775: TPP_enzyme_C" amino acids 449 to 536 (88 residues), 24.9 bits, see alignment 2.4e-09 PF01558: POR" amino acids 718 to 905 (188 residues), 66.6 bits, see alignment E=4.7e-22 PF20169: DUF6537" amino acids 930 to 1117 (188 residues), 171.5 bits, see alignment E=3.6e-54

Best Hits

KEGG orthology group: K04090, indolepyruvate ferredoxin oxidoreductase [EC: 1.2.7.8] (inferred from 100% identity to dsh:Dshi_1762)

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.7.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LMF9 at UniProt or InterPro

Protein Sequence (1135 amino acids)

>Dshi_1762 pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq) (Dinoroseobacter shibae DFL-12)
MSLQDIRLSDRYDLDRETVLLNGTQALVRLTLMQAARDRAAGLNTGGYVTGYRGSPLGAV
DQQMGRNLDLLREAGVIFEPGLNEDLAATALWGTQQAELRGEGSRDGVFGMWYGKGPGVD
RSGDVMKHANLAGTSPHGGVLFVMGDDHTGESSTTCHQSEFALLDAYMPVLSPAGVQEIL
DYGLFGWALSRYAGVWVGLKAMKDTVEATAVVDGRADRMRFVTPDYAMPEGGLNIRLVDH
WTPQEERLIAHKRYAAEAFGHANGIDKRMLGKPGAKIGFLAAGKNWLDLAHALDLLGIDG
ARAEALGITAYKVGMTWPLDVKGFLGWAEGLDVIVVVEEKRKLLEVQVKEAIFNDRRGRR
VYGGQKAPGEVLFPAYGALDPVTIAEKLGQILIEEGRASEDLEARLARLAEVRRADNAKD
LAARTPYFCSGCPHNTSTRVPEGAIAYAGIGCHVMAMWMDRDTNGYTHMGAEGANWIGEG
KFSTRSHVFQNLGDGTYNHSGIQAIRAAHAAKANITYKILFNDAVAMTGGQTNDGGLDAA
RIAWELKGIGLRDIRIVYDEKEEVDFSAFPPDLPRHGRDELMTVQEELQQVRGTTAILYI
QTCAAEKRRRRKRGTFPDPDKRVFINTDVCEGCGDCGVQSNCVAIVPAETELGRKRAVDQ
SACNKDFSCLKGFCPSFVTVSGARPRKAATAEVDLGHLPDPALPAIDGTHNLLITGVGGM
GVVTIGATLAMAAHLEGKGVGMMEMAGLAQKGGAVQIHCRIAARPEDITAVRVSVGEAHG
VIGGDLVVTGAGKIQGMMAKGRTGAVVNSHEIVTGAFTRDREFRIPGADLQVSLQARLGA
EAVVFFDASELAQKVLGDAIFSNMVVTGAAWQRGLIPLGRDAIFQAIKLNGAAPDRNKQA
FDLGRWAVLNPEAVAKMLAAEVTARPKSLAEKIDFRADHLRAYQSARLAKKYRRAVEAVT
DPDLRAVVAQNYHKLLSYKDEYEVSRLLRDTRAKAEAAFEGELELTYHLAPPLLSRAGPD
GRPRKRAFGSWIEKAYGPLAALKLLRGTPLDPFGYTAERRMERELIRLYEADLARVQAEM
TPARAEAARALLAWPDMVRGFGPVKAQAVETMRARRAELWAAFEAAEDAVAQAAE