Protein Info for Dshi_1685 in Dinoroseobacter shibae DFL-12

Annotation: Radical SAM domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 PF04055: Radical_SAM" amino acids 37 to 182 (146 residues), 74.9 bits, see alignment E=9.1e-25 PF13353: Fer4_12" amino acids 42 to 110 (69 residues), 26.9 bits, see alignment E=5.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1685)

Predicted SEED Role

"Radical SAM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LLP9 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Dshi_1685 Radical SAM domain protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MKDLAANAGKFQDPFVTATGETRASVALTNPQTLWFNTGTLCNIECANCYIESSPTNDRL
VYITAAEVTDYLDQLEDRNWGVREIAFTGGEPFMNPEMIEMTEAALARGYEVLILTNAML
PMMRKTMREGLLRLHAAYGDKLTLRISVDHWSEKLHDEERGKGSFAKTLQGMAWLRDNGI
RMAVAGRTVWGDTDAESREGYARLYAEHGFQIDAFNQGETVLFPEMDERAEVPEITTACW
GILNKSPDDVMCASSRMVVKRRGAEKPAVLACTLLPYSPEFELGETLAEAEGAVQLNHPH
CAKFCVLGGASCSA