Protein Info for Dshi_1489 in Dinoroseobacter shibae DFL-12

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 230 to 247 (18 residues), see Phobius details amino acids 284 to 310 (27 residues), see Phobius details amino acids 330 to 356 (27 residues), see Phobius details PF00528: BPD_transp_1" amino acids 150 to 361 (212 residues), 112.1 bits, see alignment E=1.4e-36

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to dsh:Dshi_1489)

Predicted SEED Role

"Oligopeptide/dipeptide ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LK32 at UniProt or InterPro

Protein Sequence (363 amino acids)

>Dshi_1489 binding-protein-dependent transport systems inner membrane component (RefSeq) (Dinoroseobacter shibae DFL-12)
MFAFILRRFGVMALTALCVTFIVFFMTNLQPNLEKVAKSEGSVRMTDAEVASWLSNNGYD
RPMLVRYGEWLGLVPGWTRTLEDGGMRGRCIDGIWRSGDPEPPGFCGLLQGDFGTSTVFK
ADVGGVIAERLALTGKLMFWVMVVMVPSALLVGVLAGMREGSRTDRTLSTASIITTATPE
YVSGVVLVVLFASSTAGLSPLFAEWGWIDGRTILKGSAASAAEDATLENFTLPVLTMALY
GMGYIARMTRASMAEVMTAQYIRTARLKGVSFRNIVLKHALRNALIAPFTVIMLQFPWLL
TGVVIVETLFNYKGFGWTLVQAASNNDVELLLSCSVVAVIVVLVTQLISDIGYVFLNPRI
RIA