Protein Info for Dshi_1421 in Dinoroseobacter shibae DFL-12

Annotation: ribose ABC transporter, substrate-binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13407: Peripla_BP_4" amino acids 98 to 316 (219 residues), 124.5 bits, see alignment E=3e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1421)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LJE1 at UniProt or InterPro

Protein Sequence (390 amino acids)

>Dshi_1421 ribose ABC transporter, substrate-binding protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MRMRILASLGLVSTLMINTAAMAEGLEELPPKLQAAYQGVDEGQPIGTSAYRDWTPRSGP
PWTIGYASSYAGNTWRAEGLSRLTEDLLPVYRQAGLVDEIIVTQSDLNDARQIQQIRQLV
DQGVDAIIVCCSNPVALNKAVEYAYSKGVVVFSYSGYLTSDKALNASSNYTLGGYEIAKA
MIEEVGGEGNFLLVSGIAGAASSESFDTGAMRALEEFPNAKLVGQVWGNWTDQVAQTEVQ
KFLATNPARIDGIIAQGSQETGVLKAVLQSGREVMPISLAGSAGAACYLKQNPDWISHAF
QIWPPGDEMELGFNSVIRTLQNQGPKLQSILRGVYRLPAAEYVASLGDDCSVDSTAYIQP
GIDVWFPDDKAAGYFLRPENPLDWAAKNVN