Protein Info for Dshi_1413 in Dinoroseobacter shibae DFL-12
Annotation: extracellular solute-binding protein family 1 (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1413)Predicted SEED Role
"Various polyols ABC transporter, periplasmic substrate-binding protein" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A8LJD3 at UniProt or InterPro
Protein Sequence (411 amino acids)
>Dshi_1413 extracellular solute-binding protein family 1 (RefSeq) (Dinoroseobacter shibae DFL-12) MNFIKTGFLPAAILAVGIGGASACELAEGSVRILSNDFPALQAVTGAAAACATGGATVTA NLTTEHRNIQVAALTADPAEYTSAVVSNSSLVPLLTDGLVRPLDDLIAAHGAGVSPNQKI MIDGRTMAIAFMANAQHLYYRRDILEAAGLEVPTTYEEVLAAAEAIRDQGLMEFPLGGTF KAGWNLAQEFVNMYLGHGGAFFEPGSAAPAINNAQGVAALEMMKALTAYMNPDFLTYDSN ALQAEFEAGNVALANFWGSRAGGVTDAEGATPEIAAAIGFAAAPTVAGGTTPASTLWWDG FTIATNIPDVDAEASFVAMVHGASTEVANANPNAAVWLIDGYTPGDAAVGVLATAQMGTS PYPMLPYMSLMHTALGTEIVEFLQGSETAEQALSDVEASYRAAAREAGFLN