Protein Info for Dshi_1034 in Dinoroseobacter shibae DFL-12

Annotation: transcriptional regulator, LuxR family (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details PF00196: GerE" amino acids 106 to 159 (54 residues), 32.3 bits, see alignment E=3.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1034)

Predicted SEED Role

"Transcriptional regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LSG2 at UniProt or InterPro

Protein Sequence (180 amino acids)

>Dshi_1034 transcriptional regulator, LuxR family (RefSeq) (Dinoroseobacter shibae DFL-12)
MTEITAVRARRSVSLTVVLCVQVVCAFFFVADITLSVLGIPFAPLSWQVMELIEIGAALG
LIIGVAVGILALREARARTAVAERALQAASGAFMDLVEERFTEWGLTPAERDVALFALKG
LTLQEIAAMRATSEGTVKAQTNAIYRKSGVANRAQLVSLFVEDLMGEAISRPGVDAAPAR