Protein Info for Dshi_1005 in Dinoroseobacter shibae DFL-12

Annotation: putative ribonuclease BN (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 41 to 68 (28 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 150 to 180 (31 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 39 to 289 (251 residues), 209.2 bits, see alignment E=4.5e-66 TIGR00765: YihY family inner membrane protein" amino acids 42 to 287 (246 residues), 98.2 bits, see alignment E=3.6e-32

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 100% identity to dsh:Dshi_1005)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LSD3 at UniProt or InterPro

Protein Sequence (318 amino acids)

>Dshi_1005 putative ribonuclease BN (RefSeq) (Dinoroseobacter shibae DFL-12)
MPKADTDPENPVPEMFRHDRRQWMKALQSVGGKMDGWNIGLISAGVAFYGLLAIFPALAA
VIAIWGLVADPMVVDQQMALVGELMPQEAYRLIDAQIDALTQTTSSTLGWATLLSILAAL
WSTRAGVSALMRGLNAIYGTPNRKSWRHYLAALSLTAVLVLVALVALTAVVITPIVLAFL
PLGSWTELALRGTRWVVAIGVLLAGLSIVYRYGPNRTCVKMQWLTPGSIAVVVLWAAASL
GFSYYLSNFGNYNEVYGSIGAVIALLMWLYISAFLLLLGAGLNVELERRAGLGPDAATRA
EPPAAPPTAGVIADSGSV