Protein Info for Dshi_0990 in Dinoroseobacter shibae DFL-12

Annotation: putative DNA helicase related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1559 PF13195: DUF4011" amino acids 16 to 187 (172 residues), 129.1 bits, see alignment E=5.5e-41 PF13086: AAA_11" amino acids 299 to 362 (64 residues), 31.9 bits, see alignment (E = 4.2e-11) amino acids 936 to 977 (42 residues), 29.6 bits, see alignment (E = 2.1e-10) PF13087: AAA_12" amino acids 1011 to 1205 (195 residues), 37.3 bits, see alignment E=7.8e-13 PF18741: MTES_1575" amino acids 1253 to 1350 (98 residues), 116.4 bits, see alignment 1.8e-37 PF11784: DUF3320" amino acids 1411 to 1457 (47 residues), 59.4 bits, see alignment (E = 9.4e-20)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0990)

Predicted SEED Role

"DNA helicase related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LS25 at UniProt or InterPro

Protein Sequence (1559 amino acids)

>Dshi_0990 putative DNA helicase related protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MSDPAISKVLEAARRKLLDTGTRNRLVHVNRANTRANCLNIINERADDVFAILRSQSRKM
RFKAMGKDKSSEGQDMLLALPEPEIPEGADRLTDLFLETPLGPEAQARRLLRLATNAKTA
EEEQGLNILYLAMGFLQWRESPSSETLREAPLILLPVQLIRNERTSTYDILCRDDDIATN
LPLQQRLRTDFGISLPEIEEGEDWKPSDYFAQVRDAISGQPGWALDADGMQLGFFSFAKL
LMHRDLDTATWPEGAFAENDLLRGLLTEGFEAPTPIFGPDDRLDDILDPAEIVQVIDADA
SQTKVIEEVRRGASLVVQGPPGTGKSQTITNLIAAAAHDGKTVLFVAEKMAALSVVHDRL
VRAGLRDICLELHSRTANKKALAQELGRTLMASAQALPGTPDPARLRSTRDNLNRITSLL
HDPLPSSGDTPFRAIAEICGFIGNGAPPPCIPLEGLDELDQCKRDAACAALSKYAEALER
AGPPEQHPFRGTGALDLQPTDLARLEDELTGAASEIEILLSEGQRLADATGLAAPNSLGE
VDALGAALSALAGIPQGAKDWIAPLFEHVSSSRLDEALAVGASWADAKQSAETRFVEAAW
SAQVTSIRTALAKGQASFFSRLFGGYRRASAELAGLLSGPLPKSPSERLALVDEIMKVQS
LRHSLADEEAWLQAMLGPTWRGERTPFSVAASASKWLAGLRATGNIGSSDQLVSSLDAVP
DPEAAAKEIKTKSIACRQRIDAPITRLQLDVVRADLGTDLENASLSEMREAFLQMASDTA
CYGDWVGLARAIASAIDAGAEGVVDAVADERVPPQRAAQEFAYACAEARWNAARGARPEL
NDLPQLDRHDLVALFSDLEKERIDTARNLILSRHFEQMPRGTMGEMGIIRGEIARKRGHK
PIRWVMRNAGPMVQRIKPVMLMSPISVAQFLPPGSAEFDILVIDEASQIKPEDALGVIAR
ARQIVVVGDQKQLPPTSFFDRLVDDVEENDDEEEAVVGATAADMESILSLCEARGLRQRM
LEWHYRSRDPSLIQISNAEFYEDRLVLPPSPLQLDPDYGLKFRRVPGIYARGGSGLGRQG
TNRIEAEAVVAAMADHARNWPELSLGVVAFSKAQSNMLTEVLELARRRDPVLDAFLREGK
SEDVFVKNIENVQGDERDVILISVGYGPQEPNGRLPSMSFGPVNGEGGERRLNVLFSRSR
VRCEVFASFDPGDIDPSRSSREGPRLLKRFLDFAKTGQIETHTVTGLEADSPFEEDVARV
IRSEGFLADAQVGSAGFRIDIGVRHPDQPGQYLLAVECDGAAYHAALWARERDRLRQGIL
ENLGWRFHRIWSTDWFHHRSREVEKLRAAIVEAREALNDGVQVRGANQGATNIPASEEVS
EHQPETIDIGHLALTAPPYVRAELSVRSSVEPHEAPVQQLSELVSRIVAIEGPIHADEIA
RRIAAAFGRSRTGNRIADAASRAVRLALQRDTELRRDGAFLMTSAQAETPPVRDRSSETG
TVLKAEYLPPSEIAAAAKLVLKESGEVGQDDLVRAVARLFGFQRVGTDLSEAIRNGLPK