Protein Info for Dshi_0988 in Dinoroseobacter shibae DFL-12

Annotation: integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 PF00589: Phage_integrase" amino acids 193 to 342 (150 residues), 64.7 bits, see alignment E=4.7e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0988)

Predicted SEED Role

"Phage related integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LS23 at UniProt or InterPro

Protein Sequence (370 amino acids)

>Dshi_0988 integrase family protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MPTFRMRDSSGSIRLKHVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMM
GATPRAPTVPLDRRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPY
ALMEPRHVRRMRDEMADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGF
HSWTMEEVRQFEEHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRD
RKPVTLSIPVLPELKAVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSA
HGLRKAGAALAAENGATERQLMAIFGWTTMKEASRYTRAARQRVLAASGMKLLSRGGDGP
GREEARGGET