Protein Info for Dshi_0518 in Dinoroseobacter shibae DFL-12

Annotation: Monosaccharide-transporting ATPase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 39 to 61 (23 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 91 to 113 (23 residues), see Phobius details amino acids 120 to 137 (18 residues), see Phobius details amino acids 143 to 166 (24 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 39 to 321 (283 residues), 129 bits, see alignment E=9.6e-42

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to dsh:Dshi_0518)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNV6 at UniProt or InterPro

Protein Sequence (336 amino acids)

>Dshi_0518 Monosaccharide-transporting ATPase (RefSeq) (Dinoroseobacter shibae DFL-12)
MNDRLLDIAIRYGFLMLLFGLIVYFSLAAPGFLGPLSAAFVLQSVAITGILALGVTCTLV
VGGFDLSIGAVATSALMLSAYSMVILEHPAIVAVLLCLAMGALVGFINGLLIVKFRVPDL
LATLGMMFLLIGLQRIPTQGNSIATGMTLSDGTVAEGTFSAAFLWLGRHRFDVVIERLLP
MPVVIFVGIAVLIWLFLGFTRHGRLMYAIGSNERAAGLVGTPVNRYKIAAYMISGVTASI
GGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMT
MMNAPYYTQDFVKGAVLVAALVFTFYLSSRRSGPGH