Protein Info for Dshi_0437 in Dinoroseobacter shibae DFL-12

Annotation: F0F1-ATPase subunit, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 95 transmembrane" amino acids 34 to 58 (25 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details TIGR02230: putative F0F1-ATPase subunit" amino acids 9 to 91 (83 residues), 85.8 bits, see alignment E=1e-28 PF09527: ATPase_gene1" amino acids 35 to 87 (53 residues), 44.4 bits, see alignment E=7.1e-16

Best Hits

KEGG orthology group: K02116, ATP synthase protein I (inferred from 100% identity to dsh:Dshi_0437)

Predicted SEED Role

"Sodium-transporting ATPase subunit Q"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LN41 at UniProt or InterPro

Protein Sequence (95 amino acids)

>Dshi_0437 F0F1-ATPase subunit, putative (RefSeq) (Dinoroseobacter shibae DFL-12)
MTQKPDRSAEDIGQRARRMKAARDDPGPSPLRGIGTFGMIGWSIAVPTVGGVFLGLWLDR
VAPQTFSWTIALLLGGVVLGALIAWNWIGKEGDGR