Protein Info for Dshi_0412 in Dinoroseobacter shibae DFL-12

Annotation: beta-Ig-H3/fasciclin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 PF02469: Fasciclin" amino acids 20 to 165 (146 residues), 60.4 bits, see alignment E=2.1e-20 amino acids 197 to 341 (145 residues), 62.4 bits, see alignment E=5e-21 PF00353: HemolysinCabind" amino acids 358 to 392 (35 residues), 21.6 bits, see alignment 1.7e-08 amino acids 387 to 420 (34 residues), 33.8 bits, see alignment (E = 2.7e-12) amino acids 395 to 429 (35 residues), 39.6 bits, see alignment 4.1e-14 amino acids 413 to 438 (26 residues), 20.1 bits, see alignment (E = 5.3e-08)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0412)

Predicted SEED Role

"Calcium binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LN17 at UniProt or InterPro

Protein Sequence (510 amino acids)

>Dshi_0412 beta-Ig-H3/fasciclin (RefSeq) (Dinoroseobacter shibae DFL-12)
MTRFSTKLPNIVAIAAGSDDFNLLVKALTAADLVGTVQGLKDITVFAPTDAAFTQLAVDL
GFAGDTGDEDAVFASLVASLTELGGGDPIPLLTDVLLYHVSAGAKTAAEIDALEVVGTFL
PGATFGSEGTELVDNEPDVANPNIVIPDIAASNGTIQAIDRVLLPIDIPGNEPPAPTETL
AGIVAASGGVFDGDKSDFDLLLNAVQAAGLVGALDDPEADLTVFAPNDAAFIGLAQTLGF
DGEDEGAAFAHIVEALTLLSGGGDPIPLLQDILLYHVVPEALGSDAVLSAESIPTLLGAP
LGVDGVSLVDADPDIGDPALIETDIAATNGIAHVLDGVLLPADILNGDGGRGRVDFEIGD
AGNERFFTGANTDFVSGLGGNDVIRLGAGDDVGLGGAGNDTLQGGRGADTLDGGAGRDVL
KGGLGDDLLTGGADADVFLFNGFSGADTITDFSLGEDLLQIRARGIDDYGDLAHRISDSD
AGAVIAFGGTEITLAGIGADALTASDFQFI