Protein Info for Dshi_0242 in Dinoroseobacter shibae DFL-12

Annotation: fatty acid hydroxylase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 119 to 267 (149 residues), 86.3 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0242)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LLI1 at UniProt or InterPro

Protein Sequence (325 amino acids)

>Dshi_0242 fatty acid hydroxylase (RefSeq) (Dinoroseobacter shibae DFL-12)
MDLLSNYLRDLGAVPFNMNLRISLVYLLCTVVLAGAIWIWRGRPTGFLSWLLPASVYRHR
SNLLDIKLFLTNRLVDASGLAGAVFFPPLVAIGLIGLWADVAGYNPPPETWGRTLLATII
IVMASDFCKYWAHRWHHEWKVLWPFHAVHHSADVLTPLTVMRAHPVETLLRNLLITVVVG
VVQAVVLILVLGQIDFVTIGGANALYVLFNALGANLRHSHIWLSYGAVLEHVFISPAQHQ
VHHSVAVEHHDKNYGSIFALWDWAFGTLYIPPRQEALTFGISDAAGKRIAQPHETLGAAL
LTPFAESIAAARTGEDAAAPELRKP