Protein Info for BT4770 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved protein found in conjugate transposon (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 transmembrane" amino acids 580 to 597 (18 residues), see Phobius details TIGR03783: Bacteroides conjugation system ATPase, TraG family" amino acids 2 to 767 (766 residues), 1486.2 bits, see alignment E=0 PF19044: P-loop_TraG" amino acids 348 to 766 (419 residues), 709.6 bits, see alignment E=5.1e-218

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4770)

Predicted SEED Role

"Conjugative transposon protein TraG" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q89YG2 at UniProt or InterPro

Protein Sequence (772 amino acids)

>BT4770 conserved protein found in conjugate transposon (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MLPNYSILHKQDIFITEKYEPDSRKDDLSFLSRSFERHFNERPYLHHTCYLFLTKTTRER
SRQQSNWNTLCRGFLVPKEIRDKETVERFMEAVGQFESIVNDSGLVRLERLTTEEITGTE
NEPGIIERYLTLSADGTTMLQDMQLNPDEMRIGDKRLCLHTLSDLDDLPGKVRTDGRYER
LSTDRSDCRLSYAAPVGVMLSCDHIYNQWIFIDDSNENLSRFEKMAKNMQSLSRYSRSNQ
INKEWLDEYLNEAHSNGLQSVRCHCNIVAWAENGDELRRVKNDVGSALALMECTPHHNTT
DLPALYWAGIPGNEADFPAEETFYTFTGQALCFFTAETCYRNSLSPFGIRMVDRLTGKPV
FLDISDLPMKKGVVTNRNKFILGPSGSGKSFFTNHLVRQYWEQGTHILLVDTGNSYKGLC
DLIHQKTGGDDGIYFTYKENDPISFNPFFTEDYQYDIEKRDSIKTLILTLWKREDEPPRR
SEEVALSNAVSLYIEKIKKNRKIKPNFNSFYDFVRKDYRKVLADKNVREKDFDVDGFLNV
LEPYYKNGEYGYLLNSDKELDLLNKRFIVFELDVVKDNPILFPVVTIIIMETFINKMRRL
QGIRKMILIEEAWKAIAKEGMANYIRYLFKTVRKFYGEAVVVTQEVDDIISSPVVKETII
NNSDCKILLDQRKYQNKFDQIQNLLGLTDKERSQILSINLANAANRLYKEVWIGLGGTQS
AVYATEVSAEEYLCYTTEETEKLELTRLTEKLGGNIELAIKQLAESKRQENK