Protein Info for BT4624 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative resolvase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 PF00239: Resolvase" amino acids 2 to 143 (142 residues), 120.1 bits, see alignment E=8.6e-39 PF02796: HTH_7" amino acids 157 to 194 (38 residues), 26.5 bits, see alignment 5.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4624)

Predicted SEED Role

"putative resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q89YV7 at UniProt or InterPro

Protein Sequence (217 amino acids)

>BT4624 putative resolvase (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MIYGYIRVSSDKQTVENQRFEISNFCNNNELTIGDWIEETISGTKNYTKRQLGRLLRKVR
KDDIIICSELSRLGRNLFMIMEILNICMTKECKVWTIKDNYRLGEDIQSKVLAFAFGLSA
EIERNLISQRTKEALARKKAEGAMLGHCRGFRCRLNPKCANKHDYIVKELAKGTEKTVIS
KRLKVSKTTLYRYLVYTGLHLPINCQQEGWEEYGIYH