Protein Info for BT4504 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 51 to 77 (27 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details PF01914: MarC" amino acids 10 to 219 (210 residues), 96.8 bits, see alignment E=6.1e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4504)

Predicted SEED Role

"Probable multiple antibiotic resistance protein MarC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q89Z73 at UniProt or InterPro

Protein Sequence (224 amino acids)

>BT4504 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MSLSSLLIIFSSSFMALFPVINPLGNGFVVNGFFADLDPSQRKTAIQKLTINFIMIGVGT
LLIGHLFLLIFGLAIPVIQLGGGILICKTAIELLGDSNSSDKEGTSQNVDSFKWKSIEQK
IFYPITFPISIGPGSISVIFTLMASASVKGKLLHTGINYLVIALVIICMAGILYVFLSQG
QRIIQKLGPVGNQIINKLVAFFTFCIGIQISVTGISQIFHLNIL