Protein Info for BT4317 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative lipoprotein protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00877: NLPC_P60" amino acids 61 to 165 (105 residues), 99.4 bits, see alignment E=5.5e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4317)

Predicted SEED Role

"Lipoprotein spr precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q89ZQ9 at UniProt or InterPro

Protein Sequence (170 amino acids)

>BT4317 putative lipoprotein protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MGVNFKLIFILTGLIFILSSCRTSAPRLDYQALARASILLGVDINMEDNHKLYLESAEWI
GVPYRGGGDSKRGTDCSGLTYQIYRKVYRTQVPRNTEDLRKESTKVAKRNLREGDLVFFS
SSRSRKKVAHVGIYLKNGKFIHASTSKGVIVSRLSEDYYTRHWISGGRIR