Protein Info for BT4041 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 624 PF03993: DUF349" amino acids 121 to 192 (72 residues), 55.6 bits, see alignment E=2.8e-19 amino acids 197 to 270 (74 residues), 53.7 bits, see alignment E=1.1e-18 amino acids 274 to 352 (79 residues), 67 bits, see alignment E=7.6e-23 amino acids 357 to 429 (73 residues), 88.8 bits, see alignment E=1.2e-29 amino acids 433 to 506 (74 residues), 73.1 bits, see alignment E=9.7e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4041)

Predicted SEED Role

"FIG00896368: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A0I0 at UniProt or InterPro

Protein Sequence (624 amino acids)

>BT4041 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MDAHDTNLPLNQGELEEEKKTVEVSEAITETPTEEGTEKVTEEVTAEVQTEAAPKPATKE
DVLNRLKELAQDSENANKQEIDNLKQSFYKLHNAELEAAKKQFIDNGGAAEDFTPKDDPT
EEEFKRLMGSIKEKRSQLVAEQERQKEENLQVKLSIIEELKELVESGDDANKSYTEFKKL
QQQWNETKLVPQGKVNELWKNYQLYVEKFYDLLKLNNEFREYDFKKNLEIKTHLCEAAEK
LADEEDVVSAFHQLQKLHQEFRDTGPVAKELRDEIWNRFKAASTAVNRRHQQHFEALKES
EQHNLDQKTVICEIVEAIEYDELKTFSAWENKTQEVIALQNKWKTIGFAPQKMNVKIFER
FRHACDDFFKKKGEFFKALKEGMNENLEKKKALCEKAEALKDSTDWKATADALTKLQKEW
KTIGPVAKKYSDAVWKRFITACDYFFDQKNKATSSQRSVEIENMEKKKALIEKLASIDEN
MDTDEASTLVRELMKEWNTIGHVPFKEKDKLYKQYHGLIDQLFDRFNISASNKKLSNFRS
NISNIQGGGSQSLYREREKLVRIYENMKNELQTYENNLGFLTSSSKKGSSLLTELNRKVD
KLKADLELVLQKIKVIDESLKAEE