Protein Info for BT3951 in Bacteroides thetaiotaomicron VPI-5482

Annotation: transcriptional regulator (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1324 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 793 to 814 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 37 to 60 (24 residues), 21.1 bits, see alignment (E = 4.9e-08) amino acids 592 to 615 (24 residues), 20.6 bits, see alignment (E = 6.8e-08) PF07495: Y_Y_Y" amino acids 722 to 786 (65 residues), 53.8 bits, see alignment 3e-18 PF12833: HTH_18" amino acids 1235 to 1312 (78 residues), 76.6 bits, see alignment 3e-25 PF00165: HTH_AraC" amino acids 1275 to 1311 (37 residues), 30 bits, see alignment (E = 8.7e-11)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_3951)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A0S0 at UniProt or InterPro

Protein Sequence (1324 amino acids)

>BT3951 transcriptional regulator (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MRIRLILVFITLICPLISIADNVKDAYLFQKVDYQQGLSNSAVLCLFQDNEGLMWFGTYD
GVNCYDGKSMEVFRSDFSEQKTLSNNIIHSIQQADSSCLWITTHLGANRFSKDSRQVICN
YEFDTDFVIHSNHAGNTWALSYDWIAYYNTHHRRFVRIPMPDIKMLKVDVRAFVTDEGEL
YLFPYESGDLYRFSLNSFDQDTLSTRLTTTPSHFHSKQIQYVCYQNGVFCFYDSDYDLFV
YDISRKSKIYIRNIGEMVHKYGQITGIVPFYEDIVIAFQTNGLIRLRLSQKYAEEIIDQN
MRIYGIYNDSRQGVLWVGTDGQGAIMYSKKYSIATNLMLNSFSPNLTRQVRSIMTDKYGG
LWFGTKGDGLLHVKNYRDGVHASNTEVYSLDKKQNAMSYVKQNREFQVYSMLESRYRNGF
WVGTGSSGLCYYSFDNGKLHELSNRETGTGREVAEVHSIFEESDSVLYLATSGKGFYKVI
VDNSKQDVQIKSWKNYRFYHEQQELNLFYSMVPQGDSLLWLGSRQKGLIRFDRKTEEYQI
YSLNEILHKSVDDILCLHWHGEQLYVGTTSGLVRVTFKERKLEADYIGREQGLLNDMIHS
ILEDANGLLWLGTNRGLIKFNPENSFSHAYYYSGGIQIGEFSDDAYYRCPYTGCLFFGGI
NGLLYLDKKVSAAPEYYPEILLRKLIIEKTFVNLQDHYLPDRKGLRMQGANLSFSLFFVV
PDYASGGDVEYSYMLEGYDKDWGAFSSVNEASYFSVPSGDYLFKVRYKKDVFATEYKTFT
IPVHILPPWYRTVYAYIVYILLGIVLVMYVIHLFRKYFRHERMMKKLLESENRNISLAAD
SYQAREVLNTCTLIYQACDQLNDKNISSEGHAEKIGQIRESVMSLLFGCGLGDECFRLLS
SLHFSVSGRLSLLKMAEEVLQVLEKEGHDVSSIQLDIPENFTYPAYKNALRCILYFSYLY
ISSCKTEKVSVTVTEEAGCMMLTFVSPDETVKGLKDVLSGEELLSIRAKDSDDMFRIRTM
QRFVFSALKQQNSVMRYITPVGQDNQLTITFDPVVVAEQNEVRKTVLLLEDREEIVWLIS
ALLSDEYEVRSVRSVQLAFDEMHKSAPTLFLVDMLMYADAESTFIKYVNKNRSMLSKTAF
IPMLTWKVSASMQRELILWADSYIVLPYDIPFLKETIHKVIYGKREARQIYMEDLEGWAD
SIVCTTTEQADFVRKFLQVVEQNLDREDLGSTFVAEQMLMSSRQFYRRFKEISGMSPSDL
IKDYRMEKAARLLQNEELSIQDVISDVGISSRAYFYKEFTRKFGVTPKVYREKLLGNDTH
KNQE