Protein Info for BT3797 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 693 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF05691: Raffinose_syn" amino acids 196 to 271 (76 residues), 35.8 bits, see alignment E=1.2e-13 amino acids 346 to 538 (193 residues), 68.4 bits, see alignment E=1.6e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_3797)

Predicted SEED Role

"Raffinose synthase (Sip1 seed imbibition) protein homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A170 at UniProt or InterPro

Protein Sequence (693 amino acids)

>BT3797 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MKRIIHICLWLLTGIFAEVSLSAQNPFIYHKGKTYKDVAAYRMEEIIDLNTHTPSTPILY
EQQVPEHQSTLSYKVALPLYVRGIFFSRDSRPGDYQWPNNTNRLLPWMFNHLEDLTRSDY
ASIPSNALPSASGDALLLELADGEYLFAKAIAGSNSLSWFQVNQDGTLTLYVSTLGEDAL
TGRLPLLIFRKSSSVYHVFSDAYDSLIADKAVSALRKRADKQYFNAFDYLGWCTWEHYHY
DIDETKILNDIDAIEASGIPVRYVLIDDGHIANKNRQLTSLVPDKKRFPNGWSRIMKRKQ
ADKIRWIGLWYSLSGYWMGISAENDFPPEIRQVLHSYNGSLLPGTSTEKIETWYEYYVRT
MKEYGFDFLKIDNQSFTLPLYMGGTQVIRQAKDCNLALEHQTHRMQMGLMNCMAQNVLNI
DHTLYSSVTRASIDYKKYDENMAKSHLFQSYTNTLILGQTVWPDHDMFHSCDTVCGSLMA
RSKAISGGPVYLSDSPSEFIADNIRPLIDETGKIFRPAAPAIPTPESILTNPLQSGKAYR
VFAPTGDEALSVICYNLNTSPAYREVESFVKREDYLLRESTGKSADSSCDSILAFNWEKQ
SAEVLNASERKIKLSGFIDSLFHLCPIRKGWAVIGIQEKYLSPATVQILKRTTEKLILDV
HCTGTLRIWADSHGKQELRSIPIKKAGRIEIMK