Protein Info for BT3555 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF13194: DUF4010
  • amino acids 188 to 399 (212 residues), 191 bits, E=1.1e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_3555)

Predicted SEED Role

"Glutamate synthase [NADPH] large chain (EC 1.4.1.13)" in subsystem Ammonia assimilation or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.13)

MetaCyc Pathways

• ammonia assimilation cycle III (3/3 steps found)
• L-glutamate biosynthesis I (2/2 steps found)
• L-glutamine degradation I (1/1 steps found)
• L-glutamine degradation II (1/1 steps found)
• L-glutamate and L-glutamine biosynthesis (5/7 steps found)
• superpathway of L-citrulline metabolism (8/12 steps found)
• L-citrulline biosynthesis (5/8 steps found)
• L-asparagine biosynthesis III (tRNA-dependent) (1/4 steps found)
• glutaminyl-tRNA^gln biosynthesis via transamidation (1/4 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Glutamate metabolism
• Nitrogen metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.4.1.13

Use Curated BLAST to search for 1.4.1.13

Sequence Analysis Tools

See Q8A1V3 at UniProt or InterPro

Protein Sequence (430 amino acids)

>BT3555 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MEQLYNYLPRELITFVLVTLFSLLIGLSQRRISLKREGETTLFGTDRTFTFIGILGYLLY
ILDPTDMRLFMGGGAVLGLLLGLNYYVKQSQFHVFGVTTIIIALITYCLAPIVSTQPSWF
YVMVIVTVLLLTELKHTFTEFAQRMKNDEMITLAKFLAISGIILPMLPHKNLIPDINLTP
YSIWLATVVVSGISYLSYLLKRYVFHESGVLVSGIIGGLYSSTATISVLARKSRKASEQE
ANEYVAAMLLAVSMMFLRFMILILIFSREIFTSIYPYLLIMSVVAAVVAWFIHSRHRRSK
DMADESEDEDSSNPLEFKVALIFATLFVVFTVLTHYTLVYAGTGGLNLLSFVSGLSDITP
FILNLLQNTGSVAVLVVVACSMQAIISNILVNMFYALFFAGKGSKLRPWILGGFGTVIGV
NLVLLLFFYL