Protein Info for BT3322 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative thioredoxin family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 870 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF08534: Redoxin" amino acids 746 to 859 (114 residues), 39.9 bits, see alignment E=7.6e-14 PF00578: AhpC-TSA" amino acids 747 to 847 (101 residues), 26.6 bits, see alignment E=1e-09 PF13905: Thioredoxin_8" amino acids 750 to 846 (97 residues), 43.3 bits, see alignment E=7.8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_3322)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A2I3 at UniProt or InterPro

Protein Sequence (870 amino acids)

>BT3322 putative thioredoxin family protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MRPPYCFLLIGLLLLCSTQTIAFAQSGTYQTIPESLRGYWQFKADNVSDWNGPLIGENFV
ENYYVVFYAEQIKQEADGSYFFHLRNQKGDTTEFRITPTGNDAATIWYKGWKEPKNCIRK
QVPDHTEPLTPLTLPDRVYQKWVKGLSGKVIYEFTRDGKLLYDGKTWDILSAGYFLNKEY
RLLVKSGESYKLLYLSFPLPKTMNVAAELQNEKVSPIASHPEIYAFAGCWINQATGDWRI
GFFEDFAVYQCQFWDYESINTQKNQTTIILKNGTEQLKVRLTRKDETSCTLSVGKEKAQT
YVLCNDKYLPDYPVADTTPFVDNGYQTDSVTLIGYLRNLPSTRPFEVDVPDMITNNEEEY
TTEIDSLGRFTLRFPVLNSHNVFIDWGRTTICTSVEPGETYFLYVDFADKKKLVMGEKAR
ILNELLAHEGLSEYIGYDEGEKMENMEYLQKTQDIIRHKSEYRAKMLNDHPLLSHKFRYY
TEQEIRYNAARDLMQRRFSVDRNKQEHLQPKFMSYVDSALYPRPVEPYTLLRDYGSFLRD
YVGYITDIAPASSNRLTVTPQKMEMLYLKFERDGKIQLSQEEKDALHAFSNFEQEIEKMK
AANTADSLTMAAYNKKMEPSIKTIQSLVGRDEIFNDYMMGNLLANSINRTLAIIDSLQMD
EKLKEILKANCYYEMLQQTHKELPDSLINKFKAEVSNPSLQAYVLNQQGIYEEISHKAIE
YPESLMPNEPLAEITDGEQLFRKIIEPYKGKVVYLDVWGTWCGPCKDMMQYAGSAKKLFE
GKDVIFLYLCNHSSDKSWKNIIKEYGLTGKIAVHYNLPDEQQRAIEKFLQVRSFPTYMLI
DKEGNIVNRDAPRPNRENDLLNAVYKLLEK