Protein Info for BT3199 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative non-specific DNA-binding protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 TIGR01201: putative DNA-binding protein" amino acids 1 to 163 (163 residues), 109.9 bits, see alignment E=6.3e-36 PF18291: HU-HIG" amino acids 1 to 110 (110 residues), 68.5 bits, see alignment E=5.6e-23 PF00216: Bac_DNA_binding" amino acids 33 to 110 (78 residues), 40.5 bits, see alignment E=2.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_3199)

Predicted SEED Role

"putative non-specific DNA-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A2V6 at UniProt or InterPro

Protein Sequence (168 amino acids)

>BT3199 putative non-specific DNA-binding protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MAVLYKSFQSVLEDKNHKKMFHPRVIYTANISTSQIAKEIAAYSSLSPGDVKNTLDNLVT
VMGQHLQASESVSLDGFGTFRMVMKSNGKGVETSEEVSAAQASLTVRFLPNFTKNPDRTT
ATRSLVTGAKCVRFDRTDTPASGSGNTNKPGGGDGGEGGGEEAPDPTV