Protein Info for BT2717 in Bacteroides thetaiotaomicron VPI-5482

Annotation: 50S ribosomal protein L14 (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 TIGR01067: ribosomal protein uL14" amino acids 1 to 121 (121 residues), 169.6 bits, see alignment E=1.2e-54 PF00238: Ribosomal_L14" amino acids 1 to 121 (121 residues), 175.9 bits, see alignment E=1.3e-56

Best Hits

Swiss-Prot: 100% identical to RL14_BACFN: 50S ribosomal protein L14 (rplN) from Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)

KEGG orthology group: K02874, large subunit ribosomal protein L14 (inferred from 100% identity to bfr:BF4171)

MetaCyc: 63% identical to 50S ribosomal subunit protein L14 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L14p (L23e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A486 at UniProt or InterPro

Protein Sequence (121 amino acids)

>BT2717 50S ribosomal protein L14 (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MIQVESRLTVCDNSGAKEALCIRVLGGTGRRYASVGDVIVVSVKSVIPSSDVKKGAVSKA
LIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARELRATNMKVVSLAPEV
L