Protein Info for BT1993 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative cell wall-associated protein precursor (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1316 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF20041: DUF6443" amino acids 259 to 358 (100 residues), 73.9 bits, see alignment 1.8e-24 TIGR03696: RHS repeat-associated core domain" amino acids 1028 to 1106 (79 residues), 72.7 bits, see alignment 2.8e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_1993)

Predicted SEED Role

"Cell well associated RhsD protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A692 at UniProt or InterPro

Protein Sequence (1316 amino acids)

>BT1993 putative cell wall-associated protein precursor (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MKIIIYITALICSLLASPALATETGQISMTNMGLKVTSSPESTLYEGDTWMITARNNFSL
NEAEIKNFVPSRISEELRPYVRLSKVEFTSNSDGICNLYFHITADPTDTIRFVIKESPQD
FPIEITPAESRHGEISLSDLGLRVTTSIDSHLEYGGQWIVTMENKNHLFTAEIERLVPSR
ITEDLRRCLRLTGVGISDISSEFVVLFFDVTFETTFPVHFIIKQSPQNIPIEILPIGRDN
YISTTNYLDNTRSGGRKEITYYNGLGYPSQKIEVGTSNKNKSIYHPIVYDNLLRDDAKSY
LPYAQGSNTEMIDWKFTESLQDFYAFNYKEYTYHFSEKVYEDSPLGRVREVYGPGSDWRS
QKASTKFSYLSNFAGNDTLNCLRFEMTEKDNQNMELKVAGNCKSSELSVTRTENEDRQVT
LEFKNKFDQVVLSRQIEHNNGSKTNNDTYYLYDEFDNLKAVLPPMVSAQLVSGSSYSSQT
SASLAQYAYLYKYDMRNRCIGTKLPGCSWEYKVYDLADRLIFSQTGEQRKRGEWQFALPD
AMGRECITGICKNAIDPFNNPILNTCVKCERTNNASLLGYSVTGVALNSATVLTAKYYDD
YQFKMQNGTLISNSSLNYEANSEFGERYTTSSQGLQTGNATARLDKNGSVTGYDYTVTYY
DYNGRAIQIKSTNHLGGYEKTYTAYNFTGQPVHTKHIHSKSNSELIEETKHSYNHAGRLS
ETVQIVNEKDSTKMSYLYDDLGNIKSLTRIDGTSTLTTTNTYNIRNWLTSIESPLFSQTL
HYTDGPGTPQYGGNISSMTWKANKESITRNYQYSYDKLNRLTSANYSEGSNSMTNTNHFN
EQVTGYDKHGNITGLKRYGQTGQSSYGLIDDLSLTYTGNQLKKVTDSATSSAYANGFEFK
DGVNLDTEYSYDEDGNLTKDLNKNISDIQYNFLNLPRRIQFKDGSEISYLYSADGTKLQT
THIIAGNTTTTDYCGNVIYENGSRDKLLTEQGYFSIADKKFHYYIQDHQGNNRVVASQDG
MIEEVNHYYPFGGIFASNSSVQPFKYNGKELDTKNGLNLYDYGARQYDPVLGRWHTMDLM
TEKYYKISPYTYCLNNPILLVDPNGMWPTWGGISRGLSNVFKGTLSFTNGAARAMADNIL
LGQTSLRETGIYSNASAYNAGQDVGDIISIFAGAAEIVNGFEEAAGGMALSPETAGISLG
VTAKGVYDITHGSLMGTSGFMKLFSKKGRVSEGSNNGSGYSKSSGKNEKHSNIDKRQQAA
NDYSTAKEKYDNLKSKTNKTAKEKKELETLKKQRDHYKKQMDYAGDHDHQRGRGGN