Protein Info for BT1670 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative transmembrane transport protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 92 to 110 (19 residues), see Phobius details amino acids 116 to 139 (24 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 287 to 311 (25 residues), see Phobius details amino acids 317 to 343 (27 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 385 to 402 (18 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 358 (329 residues), 152.6 bits, see alignment E=2.1e-48 amino acids 295 to 412 (118 residues), 56.7 bits, see alignment E=3e-19 PF00083: Sugar_tr" amino acids 59 to 190 (132 residues), 25.4 bits, see alignment E=9.8e-10 amino acids 253 to 397 (145 residues), 23.5 bits, see alignment E=3.7e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_1670)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A755 at UniProt or InterPro

Protein Sequence (414 amino acids)

>BT1670 putative transmembrane transport protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MAYHRSDQQIERSLIMAKDRLITPGYCFILAANFLLYFGFWLLIPVLPFYLSEFFQAGNS
TIGIVLSCYTVAALCIRPFSGYLLDTFARKPLYLFAYFIFMLMFAGYLIAGSLTLFIIFR
IIHGVSFGMVTVGGNTVVIDIMPSSRRGEGLGYYGLTNNIAMSIGPMFGLFLHDGGVSFA
TIFCYALGSCMLGFLSASLVKTPYKPPVKREPISLDRFILLKGMPAGLSLLLLSIPYGMT
TNYVAMYAREIGIHTQTGFFFTFMAIGMAISRIFSGKLVDRGKITQVIAAGLNLVIISFF
LLASCVYLIQWNDAACTILFFGIALLMGIGFGIMFPAFNTLFVNLAPNNQRGTATSTYLT
SWDVGIGIGMLTGGYIAEICSFDKAYLFGACLTVVSAVYFKLKVTPHYHKNKLR