Protein Info for BT1274 in Bacteroides thetaiotaomicron VPI-5482
Updated annotation (from data): L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase
Rationale: Specifically important for utilizing L-fucose and D-arabinose, which are catabolized via L-fucolose-1-phosphate or D-ribulose-1-phosphate.
Original annotation: L-fuculose-1-phosphate aldolase (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 100% identity to bth:BT_1274)Predicted SEED Role
"L-fuculose phosphate aldolase (EC 4.1.2.17)" in subsystem L-fucose utilization (EC 4.1.2.17)
MetaCyc Pathways
- superpathway of fucose and rhamnose degradation (10/12 steps found)
- L-fucose degradation I (4/4 steps found)
- D-arabinose degradation II (3/4 steps found)
- nucleoside and nucleotide degradation (halobacteria) (3/6 steps found)
- lactate biosynthesis (archaea) (2/5 steps found)
- superpathway of pentose and pentitol degradation (12/42 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.1.2.17
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8JZT1 at UniProt or InterPro
Protein Sequence (212 amino acids)
>BT1274 L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase (Bacteroides thetaiotaomicron VPI-5482) MITDEHIELFLAQAHRYGDAKLMLCSSGNLSWRIGEEALISGTGSWVPTLAKEKVSICNI ASGTPTNGVKPSMESTFHLGVLRERPDVNVVLHFQSEYATAISCMKNKPTNFNVTAEIPC HVGSEIPVIPYYRPGSPELAKAVVEAMLKHNSVLLTNHGQVVCGKDFDQVYERATFFEMA CRIIVQSGGDYSVLTPEEIEDLEIYVLGKKTK