Protein Info for BT0976 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative transport protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 47 to 71 (25 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 166 to 183 (18 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details amino acids 262 to 280 (19 residues), see Phobius details amino acids 292 to 313 (22 residues), see Phobius details amino acids 322 to 346 (25 residues), see Phobius details amino acids 356 to 379 (24 residues), see Phobius details amino acids 387 to 409 (23 residues), see Phobius details signal peptide" amino acids 32 to 32 (1 residues), see Phobius details PF07690: MFS_1" amino acids 46 to 347 (302 residues), 55.9 bits, see alignment E=3.5e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_0976)

Predicted SEED Role

"FIG00897003: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A941 at UniProt or InterPro

Protein Sequence (417 amino acids)

>BT0976 putative transport protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MNNQFTYPKEKIRFAILTFFFAQGLCMASWASRIPDFKDVFAANYAFYWGLILFMIPVGK
FVAIPLAGYLVSKLGSRTMVQVSILGYAMSLLCVGLAHEVYLLGFLLFCFGVFWNLCDIS
FNTQGIEVERLYGKTIMATFHGGWSLGACTGALIGFVMILTGTSPVWHYMLIAAIILIIV
LAGRKYLQETTLPICEHPKPGFETTDKAADKAPNGFRLLFQKPEILLLQLGLVGLFALIV
ESAMFDWSAVYFESVVHVPKSLQIGFLVFMVMMATGRFLTNYAYQLWGKKKVLQLAGSLI
CIGFFISALLGNAFDSLGMKVIINSLGFMLVGLGISCIVPTLYSFVGAKSKTPVSIALTI
LSSISFIGSLVAPLLIGAITQALDIRIAYMIIGILGGCIVLIVSFCNAFDIREENKL