Gene info for SO_r025 in Shewanella oneidensis MR-1

Name: Sp5SD
Annotation: 5S ribosomal RNA (RefSeq)
Type 4: 5S ribosomal RNA
Located on scaffold 139, - strand, nucleotides 4,942,369 to 4,942,488
See nucleotide sequence around SO_r025 or for all of scaffold 139

Other databases: MicrobesOnline

Nearby Genes

500 nthemN and add are separated by 69 nucleotidesadd and SO4732 are separated by 202 nucleotidesSO4732 and lypA are separated by 100 nucleotideslypA and SO4734 overlap by 44 nucleotidesSO4734 and Sp5SD are separated by 448 nucleotidesSp5SD and Sp23SD are separated by 203 nucleotidesSp23SD and Sp16SD are separated by 316 nucleotidesSp16SD and SO4737 are separated by 596 nucleotidesSO4737 and SO4738 are separated by 91 nucleotidesSO4738 and menB are separated by 118 nucleotides SO4730: hemN - oxygen-independent coproporphyrinogen III oxidase (NCBI ptt file), at 4,934,130 to 4,935,506 hemN SO4731: add - Adenosine deaminase (EC 3.5.4.4) (from data), at 4,935,576 to 4,936,571 add SO4732: SO4732 - conserved hypothetical protein (NCBI ptt file), at 4,936,774 to 4,938,579 SO4732 SO4733: lypA - lysophospholipase L2 (NCBI ptt file), at 4,938,680 to 4,939,669 lypA SO4734: SO4734 - sensory box protein (NCBI ptt file), at 4,939,626 to 4,941,920 SO4734 SO_r025: Sp5SD - 5S ribosomal RNA (RefSeq), at 4,942,369 to 4,942,488 Sp5SD SO_r026: Sp23SD - 23S ribosomal RNA (RefSeq), at 4,942,692 to 4,945,584 Sp23SD SO_r027: Sp16SD - 16S ribosomal RNA (RefSeq), at 4,945,901 to 4,947,429 Sp16SD SO4737: SO4737 - iron-sulfur cluster-binding protein (NCBI ptt file), at 4,948,026 to 4,949,453 SO4737 SO4738: SO4738 - hypothetical protein (NCBI ptt file), at 4,949,545 to 4,949,895 SO4738 SO4739: menB - naphthoate synthase (NCBI ptt file), at 4,950,014 to 4,950,916 menB
Locus Name Description Strand Phenotype
SO4730 hemN oxygen-independent coproporphyrinogen III oxidase (NCBI ptt file) + strong
SO4731 add Adenosine deaminase (EC 3.5.4.4) (from data) - sig.
SO4732 SO4732 conserved hypothetical protein (NCBI ptt file) + insig.
SO4733 lypA lysophospholipase L2 (NCBI ptt file) + strong
SO4734 SO4734 sensory box protein (NCBI ptt file) - sig.
SO_r025 Sp5SD 5S ribosomal RNA (RefSeq) - no data
SO_r026 Sp23SD 23S ribosomal RNA (RefSeq) - no data
SO_r027 Sp16SD 16S ribosomal RNA (RefSeq) - no data
SO4737 SO4737 iron-sulfur cluster-binding protein (NCBI ptt file) - strong
SO4738 SO4738 hypothetical protein (NCBI ptt file) + insig.
SO4739 menB naphthoate synthase (NCBI ptt file) + strong

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