Protein Info for DVUA0023 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: ABC transporter, permease protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 transmembrane" amino acids 18 to 44 (27 residues), see Phobius details amino acids 248 to 275 (28 residues), see Phobius details amino acids 298 to 327 (30 residues), see Phobius details amino acids 334 to 359 (26 residues), see Phobius details PF12704: MacB_PCD" amino acids 18 to 224 (207 residues), 46.7 bits, see alignment E=5e-16 PF02687: FtsX" amino acids 257 to 366 (110 residues), 43.2 bits, see alignment E=3.8e-15

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to dvu:DVUA0023)

Predicted SEED Role

"ABC transporter, permease protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72WR6 at UniProt or InterPro

Protein Sequence (376 amino acids)

>DVUA0023 ABC transporter, permease protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MILEIAFRNLFHDRVRLAVTLTGIVFAVVLVTIQCGLFLGFITTISGVVDNSRADLWVTS
KGVKTFDIAMPMPESRVQQVLGVEGVADAAGMVVDFAFWKKPDGGQESIEIVAFESRKGM
GGPWNMVEGDVSRLDADDAVIMDALYMDKLGVRALGEQVEIVAHGARVMGFTMGIRSFTT
SPYVFTDYRNGHLYSRFAPGQVTYVLVKAAPGVDMEDLRARIAARVAHVDVFTTGEFSQK
TREYWMLSTGAGGALVLAAVLGLVVGMVIVAQTLYATTMDHLPEFATLKAMGAPDGYVLR
IIMGQAVISAVLGYGLGMVICFGIAYLRRYGETAILVSAPLAAGMFVLTLVMCIAASVIS
IRKVLVIDPAIVFKGR