Protein Info for DVU0384 in Desulfovibrio vulgaris Hildenborough JW710

Name: flr
Annotation: flavoredoxin (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF01613: Flavin_Reduct" amino acids 12 to 146 (135 residues), 100.8 bits, see alignment E=3.8e-33

Best Hits

Swiss-Prot: 46% identical to FLR_DESGG: Flavoredoxin (flr) from Desulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0384)

Predicted SEED Role

"Flavoredoxin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72F31 at UniProt or InterPro

Protein Sequence (190 amino acids)

>DVU0384 flavoredoxin (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MFQSLGARPLVFPTPIFLVGSYDREGKPNIMTVAWGGICSSQPPSIAVSIRKNRWTYNAI
MERRAFTVCVPSTRFASHADYAGIFSGEEENKFEALGLTPVAGEHVDAPYVAEFPMAVEL
RLTHTLDIGLHTQFIGEIMDVKIDSSCLDADGLPDINKVDPVIFAPGARAYHAVGGFIAK
AFSAGKSLRR