Protein Info for DVU0354 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF09619: YscW" amino acids 42 to 145 (104 residues), 120.9 bits, see alignment E=1.6e-39

Best Hits

KEGG orthology group: K09914, putative lipoprotein (inferred from 100% identity to dvu:DVU0354)

Predicted SEED Role

"Lipoprotein-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72F60 at UniProt or InterPro

Protein Sequence (301 amino acids)

>DVU0354 conserved domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MFLRLFACAATSLFCLVSTTAQCGPVPASVVEKPALASPMHMLAVDGTVSYRERIALPPG
YTLVVRLLDVSRQDAPATEVARVELSPDRQVPVPFRLEVEEARIDERMTYAVEATIFVDG
QRRFITDTLYTVLTRGKGHRVHLVLVGAGVNRVPAATPKSFVLPDGGASPVTGAATPPQK
PEHGGDGAQPVPVVNDGASPSAPVDAGGVKPGQPGQPGQPAVSPATPPSPEKQGEGKDGT
AVKDSEAKQGGGASPVPATPTGEPAAPEGTSGAVPPPVPASSGTPGTPPGTPPGTPGTPA
P