Protein Info for DVU0336 in Desulfovibrio vulgaris Hildenborough JW710

Name: rfbE
Annotation: aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01041: DegT_DnrJ_EryC1" amino acids 59 to 423 (365 residues), 169.7 bits, see alignment E=5.8e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0336)

Predicted SEED Role

"Aminotransferase, DegT/DnrJ/EryC1/StrS family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72F78 at UniProt or InterPro

Protein Sequence (446 amino acids)

>DVU0336 aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSTARLAAVAGRLALLGRMVLTRPYYGFVTGHAHLTDAQMSEVERAKDDPAQAESVMGAF
ERTFAAVVGDGQARALAGGRMALFTALKAFGVGAGHEVVLPGFTCAVVASAVLRTGATPV
FTDVDPATFGTSPEAVERALTPRTRAVIAQHSFGIPCRVDELRAITSAKGIALIEDCALT
LGSTLDGVTVGNFGDAAFFSTDHSKPLNTLVGGVLYTRDAGLQEEVDRTVRTLPTLPEEQ
QRRIIGQLRLERRLARPGSYGAYQCAMLLRSLTRRVLKTGMTFLDDDYTVERTGAYPFPA
RMPAMLARLGLYELDRWPREATRRRALLAAYLDAAHDTPLEALLPESYRDPRRDIVGHRL
AYRHPDADRHRARMDARVHTAWTWFTVPVLGATHGLDSLGYAEGRCPVSERTGREVINWP
CVVEEGCEAPLLAFFRDMARAEGTKA