Protein Info for DVU0307 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: flagella basal body rod domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 TIGR03506: flagellar hook-basal body protein" amino acids 4 to 479 (476 residues), 312.8 bits, see alignment E=2.3e-97 PF00460: Flg_bb_rod" amino acids 5 to 35 (31 residues), 32.7 bits, see alignment (E = 1.1e-11) PF22692: LlgE_F_G_D1" amino acids 90 to 135 (46 residues), 50 bits, see alignment 5.4e-17 PF07559: FlgE_D2" amino acids 194 to 378 (185 residues), 63.8 bits, see alignment E=4.9e-21 PF06429: Flg_bbr_C" amino acids 454 to 496 (43 residues), 63.6 bits, see alignment 1.9e-21

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 100% identity to dvu:DVU0307)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72FA7 at UniProt or InterPro

Protein Sequence (498 amino acids)

>DVU0307 flagella basal body rod domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MMHGLYTGATGMRTQAEGMNVVGNNLANVNTIGFKQSMMLYQDLMSQTEPTGSAYVSGIS
QVGLGARVGDVRVLRSQGALLAGSDTTDFAISGKGFFQVTSGQDTHYTRAGNFRFNKDGQ
LVDPNGFNLMGHAITGETEGPLAAVTLVKDADGRLSMPAKATGGMTSVFNLGFDKDASSS
TANPFFGMLEAWDGTATPPLGDNAAGYTQTMRVYDAAGDTHELTIRFDNATTAGGKRYVE
FLVTMPPGEDGGAAAGSAGAGLLMSGTLQFGSSGQLQDIMAFTPSGGDPKDLANWVPATL
DASGRPQFNATFAQGGAQTVGLDLGITTTAWNNAPASAAGVGLDPTLLGGATTPKLAATS
TTAYKGSSSSTYMKQDGYAEGVLMNLEVATDGIVSGKYSNGQSQSLFRVPIFRFTSEDGL
RSEGMNHYSATTESGAAQEGKADTENYGKLMGKSLEQSNVDMAREMVNMIVTQRGFQTNS
KVVTTADTMIQKALELKR