Protein Info for DVU0281 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: exopolysaccharide biosynthesis protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details amino acids 89 to 106 (18 residues), see Phobius details amino acids 112 to 135 (24 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 454 to 464 (11 residues), see Phobius details TIGR03022: undecaprenyl-phosphate galactose phosphotransferase WbaP" amino acids 24 to 477 (454 residues), 617.9 bits, see alignment E=1.5e-189 TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 27 to 477 (451 residues), 394.2 bits, see alignment E=9.9e-122 PF13727: CoA_binding_3" amino acids 72 to 184 (113 residues), 28.6 bits, see alignment E=1.4e-10 PF02397: Bac_transf" amino acids 280 to 471 (192 residues), 225.1 bits, see alignment E=4.7e-71

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2699)

Predicted SEED Role

"Undecaprenyl-phosphate galactosephosphotransferase( EC:2.7.8.6 )"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72FD3 at UniProt or InterPro

Protein Sequence (477 amino acids)

>DVU0281 exopolysaccharide biosynthesis protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MVLSFLKKFVENHVMSRHTVAVTLFLTDMAVILGTAIGVGLLRHAFDGYLDPTHYLRLLP
FLLLFPAASFAMGLYQSVPLPPPCELKRLSLATCCTYLAIAIFIFFTRGGELYSRLTFAL
AGLVSLVAVPVARHLVRQRMARHRGWAAPALLFGKPHHVQPLAHILLSSPSLGLEPVAIV
SAEHSTCHDFGCLPAFDAETTRQYAAGHPEAYAIVVMESYDEADRAHLVEHLSRLFCSVI
LLRSSTMSTGNIWLSPIEIGGLPGLMVRQNLLDPRRLTVKRTLDLIATTLALPLILPVMA
VIALCIRLETPGPALFTQRRIGRDGYHFDILKFRTMYNDADTRLAECLEQSPELDAEWRR
DHKLRCDPRVTRVGAFLRKTSLDELPQLWNVLRGDMSLVGPRPIVDSEVQRYDAAFATYT
RVRPGITGLWQVSGRNNLSYPERVQRDMYYISNWSVWFDIWIIARTIPVVLHRDGAY