Protein Info for DVU0261 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: universal stress protein family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00582: Usp" amino acids 1 to 152 (152 residues), 84.8 bits, see alignment E=4.3e-28 amino acids 164 to 299 (136 residues), 73.3 bits, see alignment E=1.6e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2717)

Predicted SEED Role

"Universal stress protein family" in subsystem Universal stress protein family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72FF3 at UniProt or InterPro

Protein Sequence (308 amino acids)

>DVU0261 universal stress protein family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MFKKIIFATSASPACDNAAKVAFDLARRNKARLYVFHVLGVPSRGFSQVVRDLRTGEEEH
HDADYRDWVLEEMKQTYSYQLETYGSPDVVMQVVAGVPHTEILRFARQEGADLIVMGANT
REEDPGASRVRSVIGNTMQRVARSARCPVLIVNRPCTTCWNLFSNIVFSTDFSKAADSAF
NFALKTASQIGAKLYLFHACDLAANPMGVFAGQVEIERRIEKAQALMQERYVSKMGDFEN
YQVDIWEGTPYVEILKYARARQADLIVMAHHTKEGEVEEAEIGSTVEQVVLRSACPVASV
SKPEKAVV