Protein Info for DVU0210 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: tail sheath protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 PF04984: Phage_sheath_1" amino acids 208 to 364 (157 residues), 81.3 bits, see alignment E=1.1e-26 PF17482: Phage_sheath_1C" amino acids 373 to 476 (104 residues), 53 bits, see alignment E=4.9e-18

Best Hits

Swiss-Prot: 43% identical to TSP_BPMU: Tail sheath protein (L) from Escherichia phage Mu

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0210)

Predicted SEED Role

"Bacteriophage tail sheath protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72FK3 at UniProt or InterPro

Protein Sequence (487 amino acids)

>DVU0210 tail sheath protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTIGFNEVPNAMRVPFVYVEIDNSNAVSGPALMPYRTLVCGQKLAAGAQAPLVPVRVTSA
QQAVALFGAGSMLAQSCATYLAADPTTEMYAIATEDAPAGQAATGKVTLTGAATEGGTLA
LYIGGRRILCGVTSGQQAAAVATALAAAINAMPDCPCSASATAGDVTLTSRHKGLAGNGI
DVRLNYNGESTPAGLMVAITAFTGGTASPDVAPLIAALGDAHWNVLVWPWTDAASLTAIE
RELMDRWGALRMIEGVAISAATGTHAELGTLGDGRNSQHLTVMHCHGVPTPAWEVAASTA
AVAAYYGNIDPARPFQTLELKGVLPPAQKDRFTQRENNLLLFDGISTFYVDAGGAVRVQR
LITTYKTSPNGAEDPSYLDLNTVLTLGYLRYDFRNYILRKYPRHKLADDNARFGAGQPVI
TPKVGKAEAIARARMWEEMGLVENVDVFAQQVICERNQRDRNRLDWMLPPDLVNQFCVGG
VKLSFIL