Protein Info for DVU0152 in Desulfovibrio vulgaris Hildenborough JW710

Name: ppsA
Annotation: phosphoenolpyruvate synthase-related protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 PF01326: PPDK_N" amino acids 133 to 439 (307 residues), 295.8 bits, see alignment E=4.5e-92 PF00391: PEP-utilizers" amino acids 485 to 554 (70 residues), 63.4 bits, see alignment E=1.2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0152)

Predicted SEED Role

"PEP/pyruvate binding domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72FR1 at UniProt or InterPro

Protein Sequence (853 amino acids)

>DVU0152 phosphoenolpyruvate synthase-related protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSLIDFFRRRRTTPTAEERDAIMKAFRQRYTHFKDLLQSNSELGRIMSDMEQTLTGHSLF
GMNYIRSQATRAVFHTMRMVTALNAIADDRFSGLVATVESINTRISDILDARAPVRVAEF
VLPLAEVNRDVVDWVGGKNANLGEMMNRVGVPVPRGFAITTTAYRAFMDGNGLMEETRKL
LRDAFADDPEGLVRVSKAIMRRIDEAIVPDEVVEAMQAGWDATFGPGPVRCALRSSAVSE
DGSLSFAGQYRTVLNVTRDELPSAFRSVLASIFSPRVIAYRLHQGVPFEHCAMAMVCLEM
VDAVASGVAFSRHPVDLLSDAVVINGIWGLGEYVVDGVVPPDTWLVSRVRPDRVAERSIA
TKSVRLMPALHGGGTVESPVPPEQRSMPSLTDAQVIALADMALRLEEHYRHPQDMEWALD
GAGRLVVLQTRPMRLADARSDNLPASPRIEGAGLLLEGGDVACAGVGCGPVVIPSSAEEL
AAFPCGGVLVAAHSSPNYVLVMDRAQAIITDAGSVTGHMASLSREFNVPTLLNARDAMRT
LRPGQEVTVDAISGRVYEGCVEELLALRRPRQVCLGDTPVHIALRRVADHILPLHLVDPK
AATFIPRSCTTLHDVMRLVHEFSYTEMFRLSDTATVAGSVAVELKASVPLDLHVIDLGGG
LADVDGPYAYPEQVASAPFGALLEGMLDPEVHVRGPRPIDMGGFLSVMGRHMIEPPNMHT
ERFGDRSYAIVSDKYMNFSSRVGYHYSILDAYCGATMNKNYITFEFKGGAADEVRRERRV
KCIGIILRELGFTIEVQGDRVQARYLKYPPEEIRARLVQLGRLLIVTRQMDMLMTTEAAV
QTFADNFLKGDYH