Protein Info for DVU0059 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: AcrB/AcrD/AcrF family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1236 transmembrane" amino acids 27 to 45 (19 residues), see Phobius details amino acids 537 to 557 (21 residues), see Phobius details amino acids 564 to 585 (22 residues), see Phobius details amino acids 591 to 614 (24 residues), see Phobius details amino acids 635 to 656 (22 residues), see Phobius details amino acids 666 to 693 (28 residues), see Phobius details amino acids 727 to 744 (18 residues), see Phobius details amino acids 1076 to 1095 (20 residues), see Phobius details amino acids 1102 to 1122 (21 residues), see Phobius details amino acids 1128 to 1152 (25 residues), see Phobius details amino acids 1173 to 1193 (21 residues), see Phobius details amino acids 1207 to 1230 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 18 to 166 (149 residues), 56.3 bits, see alignment E=2.1e-19 amino acids 340 to 1227 (888 residues), 457.2 bits, see alignment E=1.6e-140 PF02355: SecD_SecF" amino acids 1080 to 1222 (143 residues), 22.3 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0059)

Predicted SEED Role

"AcrB/AcrD/AcrF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72G04 at UniProt or InterPro

Protein Sequence (1236 amino acids)

>DVU0059 AcrB/AcrD/AcrF family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSEGGHNDERWLHTRNSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAA
VLVAWPGAPAERVEERITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVL
DDIGFRLQEVGQLPDGAGPLTYIKDFGDTSTLMLTVASPRVSGVELDMRAVGVARAVRAL
RNDAAGEARAEGGVMARASQARVGASGAVATGRRDVPRTGVAKAEEGTPLPAINDAGAGR
MAVAWVAPSAMDDAVLRRLGGLAADWLVAHGDATAPRLHTEPGLVVLDVSTRHDAAALSA
RLAVFRAERVGANALHPDLWEPAVFASGDDARAALEAVAADRYSWRDLEAYTEKVRATLE
RLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQQVAQTLAARNTSLPGGQLETRGRGV
LLDSEGELRSATDLAEVMVATSASGAPLYLRDVADVTRSYRAPVENLNHFVHRDADGTWR
RGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTL
SLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILAL
GLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDK
GRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLLDAGRREGTVEERRARGLGRLYYAVGG
WAIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAA
DAARIVTDRVAAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLV
EVSDNHLTKELIGPLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESE
RLKAILRADPDATRVKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTA
LREGRLTVPVVSRLRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQ
QRCVVISCFPREGVLPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVM
GISIAMIYMALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGV
IVSHIIVLFDFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWE
PLCYAQAGGLTVATFVTLLMVPVLYAIAVLDLKVVK