Protein Info for DVU0041 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: transglycosylase, SLT family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF01464: SLT" amino acids 137 to 240 (104 residues), 103.6 bits, see alignment E=1.6e-33 PF01476: LysM" amino acids 366 to 408 (43 residues), 43.5 bits, see alignment 7.4e-15 amino acids 432 to 475 (44 residues), 53.3 bits, see alignment 6.5e-18 amino acids 542 to 584 (43 residues), 45.2 bits, see alignment 2.1e-15

Best Hits

KEGG orthology group: K08307, membrane-bound lytic murein transglycosylase D [EC: 3.2.1.-] (inferred from 100% identity to dvu:DVU0041)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72G20 at UniProt or InterPro

Protein Sequence (587 amino acids)

>DVU0041 transglycosylase, SLT family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MQRTRRRYRISPARRLLLMMLALVALSISVSGCATRKPLSSLPADKETACPAPEKSSGSS
DEVVELAIPPVDDGLPLSPAEQAALASTGEVDRNLSPEDYRAVVLHFKYYTHRARGTMER
LARRSQNYLPYVREVLRKRGLPEELAYLAIVESGYNPNAVSSSGAVGIWQFMPYTGKLYG
LDYDWWIDERRDPYKATHSAASYLAKLYGDFNDWHLALAAYNAGEGKIGRALAGTGAKGF
FELVRRNESLDEKARLKDETKQYVPRFIAITKIMRNLQSLGFAPLDTSCAIRPVEVRVRP
GTDLMALAQASGMSWASFSDLNPAFRRYVSPPDAHSVIYLPEARREAALAYLAKPQTRNY
AGWQPYTVRKGDTLERVGKRAGVPVSVLKQVNKVRSNNLKVGSTLLIPGGTHHEPDTGPA
IKRALAERRGSYIVKQGDTLYSIARTQGVELNTLMQANGMAEAHTLRVGQKLYIPGGSEA
PAPQPVATSKPEKPQAPVARATSTPEPRQLVASVTAMPVSAAKAPSRSAGPSAAVKTKTV
TYKVQQGDTMWAIARKFNVHPKELMRQNRLEMDTVLRPGDSITVTQE